PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G257100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 457aa    MW: 48719.9 Da    PI: 6.585
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G257100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.8e-16325420395
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                         k lt+sdv++ gr+vlpk+ ae++   + ++ +  l++ d +   +W++k+++  ++ks++y+l+  + eFvk++gL++gD+++++  ++ 
  Brast09G257100.1.p 325 KDLTNSDVGNIGRIVLPKRDAEANlpALLERDGLILQMDDFNLvATWNFKYRFwpNNKSRMYILE-STGEFVKSHGLEAGDTLIIY--KNp 412
                         789***********************777778888999995545*******99787888888888.9*******************..666 PP

                         SEE..EEE CS
                  B3  88 sefelvvk 95 
                         ++++++v+
  Brast09G257100.1.p 413 ESGKFLVR 420
                         88877775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-24320427IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-17322419IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-9323423IPR003340B3 DNA binding domain
PROSITE profilePS508639.545323425IPR003340B3 DNA binding domain
PfamPF023629.6E-13325420IPR003340B3 DNA binding domain
CDDcd100177.25E-21327420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAEAAKGSSS SPTAGGGGAG GAVVGAAARG GFPAPAGAAG AAAPHSHGTS FQALLASMGN  60
NRCVSPAAAA NGGLHHLQGH QFYNNHPAAV AGGGGGPIHA PPPMPVAMAP PYAAASPTMQ  120
PPPCALSGYQ YWQATGSQNG VSAQQVPGGF ADWTVYNHSA FVSVTCGSSS SSNNGYHQRL  180
RPCSNTAWPN FMTRNPCYST YPPAIHDHQS SSYHNNNHAE DSGFASSFRV DPQLAPVPCF  240
PTMSLASNNH SPVQFFNEAP YTTKLQTEAM HTQKEKNSED PPDMESENSE EQNHNPVHEN  300
LNLNQGPEDL TARFNCKEYH IVLRKDLTNS DVGNIGRIVL PKRDAEANLP ALLERDGLIL  360
QMDDFNLVAT WNFKYRFWPN NKSRMYILES TGEFVKSHGL EAGDTLIIYK NPESGKFLVR  420
GEKASQQSAP LLCLECKEEG SNSEECGFAL SLHKRT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579476.30.0PREDICTED: putative B3 domain-containing protein Os04g0676650
TrEMBLI1J3C20.0I1J3C2_BRADI; Uncharacterized protein
STRINGBRADI5G26100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-37B3 family protein